Pathology

Home Posts Tagged "Pathology"

Microscope-PiCam: An Open-source Raspberry Pi Microscope

Microscope-PiCam: An Open-source Raspberry Pi Microscope

Microscope-PiCam is a free open-source web-based solution that acts as the soul of a Raspberry Pi based microscope. It is an ideal solution for taking still images using a 12

24 Jul 2022 · 1 min read

OpenFlexure is an Open-source 3D-Printed Low-cost Microscope

OpenFlexure is an Open-source 3D-Printed Low-cost Microscope

The OpenFlexure Microscope is a 3D printable microscope, including a precise mechanical stage to move the sample and focus the optics. There are many different options for the optics, ranging

24 Jul 2022 · 1 min read

MicroscoPy: Build Your Own Low-cost Digital Microscope using Raspberry Pi

MicroscoPy: Build Your Own Low-cost Digital Microscope using Raspberry Pi

MicroscoPy is an open-source MICROSCOPE built using LEGO bricks, 3D-printing, Arduino and Raspberry Pi. The project is started by Yuksel Temiz, an engineer and a designer from Switzerland, who later

20 Jul 2022 · 2 min read

The Human Protein Atlas is What every Medical, Human Biology Students and Scientist Need

The Human Protein Atlas is What every Medical, Human Biology Students and Scientist Need

I planned to write about this amazing project months ago, soon after I wrote about OpenSeadragon library. I recommended the project already to my colleagues who are teaching at medical

10 Sep 2020 · 2 min read

Collaboratively Annotate large-scale DeepZoom images with MicroDraw

Collaboratively Annotate large-scale DeepZoom images with MicroDraw

What's MicroDraw? MicroDraw is a lightweight web-based collaborative annotation application for displaying and viewing large-scale (DeepZoom) images. It's completely free and open-source software that comes with no restrictions to use

9 Sep 2020 · 2 min read

18 Frameworks, Libraries, and Projects for Building Medical Applications

18 Frameworks, Libraries, and Projects for Building Medical Applications

While consulting for medical projects over the years and working on some, I collected hundreds of domain-specific libraries and frameworks built to help developers make medical applications. However, many of

3 Aug 2020 · 7 min read

10 Open-source Whole-Slide Image Viewers and Analysis Programs; Redefining Digital Pathology

10 Open-source Whole-Slide Image Viewers and Analysis Programs; Redefining Digital Pathology

What is Whole-slide image or Virtual Slides? Whole-slide images (Virtual Slides), are a high-resolution image of physical histopathology scanned with special scanners, that produces the images in gigapixels. It allows

1 Aug 2019 · 5 min read

Open Microscopy Environment (OME): Digital Pathology Redefined with Open source

Open Microscopy Environment (OME): Digital Pathology Redefined with Open source

OME (Open Microscopy Environment) is an open-source initiative aiming to produce open-source software and format standards for microscopy data. The project is started by researchers from the University of Dundee,

29 Jul 2019 · 3 min read

OpenSlide: The Whole-Slide image processing library that stands behind most of Digital Pathology Projects

OpenSlide: The Whole-Slide image processing library that stands behind most of Digital Pathology Projects

OpenSlide is a C library for processing, reading whole-slide images (virtual slides). It's the engine behind many digital pathology projects open source and closed source. It provides a simple performance-focused

28 Jul 2019 · 4 min read

BioImageXD: Open source Microscopy Imaging Software

BioImageXD: Open source Microscopy Imaging Software

BioImageXD is an open-source microscopy imaging software for processing, analyzing, visualizing, and rendering multi-dimensional microscopy images. The project was carried out by a team of researchers including microscopists, cell biologists

24 Jul 2019 · 2 min read

Cytomine: Free Open source Web-based Digital Pathology (WSI) solution with Machine learning flavor

Cytomine: Free Open source Web-based Digital Pathology (WSI) solution with Machine learning flavor

Cytomine is a web-based open source solution, aiming to empower whole-slide image processing, & analysis with machine learning algorithms. It's built to ease collaboration among researchers. Cytomine is built by a

21 Jul 2019 · 4 min read

Orbit: Digital Pathology meets AI (Machine learning & Deep learning) & Big Data with Open-source flavour

Orbit: Digital Pathology meets AI (Machine learning & Deep learning) & Big Data with Open-source flavour

Orbit is an open source software package built to empower whole slide images (Virtual slides) processing/analysis with powerful AI models for researchers and pathologists. Orbit is an advanced whole-slide

14 Jul 2019 · 5 min read

QuPath: Free Open source Digital Pathology Whole Slide Viewer, & Analysis Software

QuPath: Free Open source Digital Pathology Whole Slide Viewer, & Analysis Software

QuPath is a free & open source quantitative Pathology & Bioimage Analysis software. Because QuPath is built with Java it is cross-platform, it's available for download for Windows, Mac OSX and Linux.

3 Jul 2019 · 2 min read